The prediction from cons-PPISP sent to your email has the following format. ---------------------------------------------------------------------------------------- Submission name: 1aaaA Job submitted : Mon Aug 21 16:33:28 EDT 2006 Job finished : Mon Aug 21 16:36:04 EDT 2006 Prediction by cons-PPISP : consensus Protein-Protein Interaction Site Predictor Column 1: AA (Amino Acid code) Column 2: Ch (Chain ID) Column 3: AA# (Amino Acid number) Column 4: Score (neural network score) Column 5: Prediction of whether the residue contacts (P = Positive; N = Negative; - = Burried and not predicted) ************************************************************************* AA Ch AA# Score Prediction A 1 0.009 N Q 2 0.006 N V 3 0.078 N I 4 0.091 N N 5 0.049 N T 6 0.047 N F 7 0.097 N D 8 0.072 N G 9 0.016 N V 10 0.000 - A 11 0.000 - D 12 0.074 N Y 13 0.114 N L 14 0.000 - Q 15 0.015 N T 16 0.005 N Y 17 0.010 N K 19 0.059 N L 20 0.143 N P 21 0.000 - D 22 0.010 N N 23 0.000 - Y 24 0.000 - I 25 0.000 - T 26 0.005 N K 27 0.007 N S 28 0.013 N E 29 0.004 N A 30 0.000 - Q 31 0.034 N A 32 0.005 N L 33 0.007 N G 34 0.032 N W 35 0.030 N V 36 0.008 N A 37 0.028 N S 38 0.009 N K 39 0.039 N G 40 0.032 N N 41 0.011 N L 42 0.000 - A 43 0.037 N D 44 0.054 N V 45 0.007 N A 46 0.000 - P 47 0.033 N G 48 0.015 N K 49 0.049 N S 50 0.000 - I 51 0.000 - G 52 0.000 - G 53 0.088 N D 54 0.807 P I 55 0.689 P F 56 0.749 P S 57 0.949 P N 58 0.033 N R 59 0.741 P E 60 0.523 P G 61 0.962 P K 62 0.967 P L 63 0.000 - P 64 0.935 P G 65 0.961 P K 66 0.078 N S 67 0.081 N G 68 0.010 N R 69 0.921 P T 70 0.028 N W 71 0.000 - R 72 0.090 N E 73 0.000 - A 74 0.000 - D 75 0.000 - I 76 0.000 - N 77 0.037 N Y 78 0.000 - T 79 0.030 N S 80 0.030 N G 81 0.036 N F 82 0.028 N R 83 0.033 N N 84 0.036 N S 85 0.008 N D 86 0.088 N R 87 0.000 - I 88 0.000 - L 89 0.000 - Y 90 0.000 - S 91 0.000 - S 92 0.039 N D 93 0.011 N W 94 0.040 N L 95 0.934 P I 96 0.000 - Y 97 0.968 P K 98 0.881 P T 99 0.000 - T 100 0.006 N D 101 0.010 N Y 103 0.039 N Q 104 0.022 N T 105 0.908 P F 106 0.985 P T 107 0.935 P K 108 0.954 P I 109 0.617 P R 110 0.774 P ------------------------------------------------------------------------ The positive predictions above were from a clustering process. Other clusters may have been filtered. Filtered clusters, if any, are appended here for your information. Cluster 1 (confid=45) 98 97 107 108 106 109 64 69 110 95 65 62 105 60 59 61 56 57 54 55 Cluster 2 (confid=14) 4 3 13 5 17 19 20 77 Cluster 3 (confid=9) 82 40 39 83 TOTAL CLUSTERS 3, min_confid=2 FILTERED CLUSTERS: 2 3 2 3 ************************************************************************* If there is no prediction printed above this asterisk line, you should go back and check your submission input. The structure must be in PDB format and chain IDs of protein must be entered. This is an automated email, please do not reply. Please contact pi2pe.fsu@gmail.com if you have questions or suggestions. http://pipe.scs.fsu.edu ----------------------------------------------------------------------------------------