Predict association rate constant for your protein complex from PDB files

  • Type a name for referencing your submission
  • Enter your email address, where the prediction will be sent to
  • Give the structure of your complex
        Enter the PDB entry name (e.g., 1BRS) of your protein complex
        Or upload your own PDB file.
  • Enter the Chain IDs of the complex in the form of A:D (i.e., separate the chains of two subunits by a colon)

  • pH for charge assignment by pdb2pqr:
  • Ionic strength for ka calculation: (M)
  • The server will now build the PQR file. Please wait a few minutes before making another submission.

    We set up the PQR file with AMBER charges and Bondi radii (see explanation).